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Basic information

CohesinDB ID: CDBP00413372

Locus: chr21-14947667-14947907

Data sourse: ENCSR054FKH, GSE72082

Cell type: Hep-G2

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: False Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 47% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 87%, "7_Enh": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: THAP11, NANOG, BCL6, HMG20A, CEBPA, FOXA2, RBPJ, SOX13, MIER2, FOXA1, FOXF1, GATAD1, SAP130, RXRB, ZNF580, KDM1A, ERG, RELA, RARA, ZNF19, HOMEZ, CHD7, RAD21, ARNT, ZIC2, HIF1A, ZNF48, PRDM9, SMAD4, GABPA, XRCC5, ZNF614, MIER3, NR2F6, TEAD3, TEAD1, KLF6, RCOR2, ESR1, TP53, ELF3, RBM22, T, EP300, CTCF, TCF12, NFKBIZ, SOX5, IKZF5, GATA2, ZNF644, ASH2L, ZBTB26, ZGPAT, FOXP1, NFIL3, FOXA3, GATAD2A, TFAP2C

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 1

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00413372