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Basic information

CohesinDB ID: CDBP00413374

Locus: chr21-14949802-14950014

Data sourse: GSE116344, ENCSR167MTG

Cell type: RH4, Hep-G2

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 47% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 92%, "9_Het": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: PAX3-FOXO1, SFPQ, AR, ZBTB26, EZH2, NOTCH3, HIF1A, ESR1, NCOA1, XBP1, CTCF

Target gene symbol (double-evidenced CRMs): HSPA13,SAMSN1,RBM11

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 2

Related genes and loops

Related gene: ENSG00000185272, ENSG00000155304, ENSG00000155307,

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Deatailed information for cohesin site CDBP00413374