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Basic information

CohesinDB ID: CDBP00413376

Locus: chr21-14953826-14954137

Data sourse: GSE206145-GSE177045, ENCSR153HNT, GSE68388

Cell type: K-562, MCF-7, HuCC-T1

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: Mau2,SA1,Rad21,SMC1

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 47% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 96%, "5_TxWk": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: AR, GATA1, ETS1, TEAD1, TRIM28, EBF1, ZFX, GATA3, RBM22, ZNF143

Target gene symbol (double-evidenced CRMs): HSPA13,SAMSN1,RBM11

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000185272, ENSG00000155304, ENSG00000155307,

eachgene

Deatailed information for cohesin site CDBP00413376