- Basic information
- CohesinDB ID: CDBP00413382
- Locus: chr21-14979219-14979633
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Data sourse: GSE206145-GSE177045, ENCSR167MTG, ENCSR230ZWH, GSE72082, ENCSR054FKH
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Cell type: MCF-7, Liver, Hep-G2
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 65%,
"15_Quies": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, HMG20A, ZNF660, NME2, FOXA1, RXRB, NFIC, ZBTB44, ATF4, MYOG, TRIM28, SNAI2, LMO2, ESR1, MLL, EP300, TRIM24, FOXA3, GATAD2A, NANOG, TOP2A, MLLT3, ZNF300, ERG, ASCL1, USP7, MYC, SMARCA4, HOMEZ, RAD21, LHX2, RXRA, NKX2-1, GABPA, NR2F6, NR3C1, ESRRA, CEBPB, KMT2A, SPI1, HDAC2, GATA2, ZNF644, NFIL3, MRTFB, NCOA2, RUNX1, THAP11, BCL6, CEBPA, NKX2-2, SOX13, RARA, RUNX2, CDK6, ZNF184, NFIB, DAXX, ZNF48, SMAD4, SUPT5H, CDK8, PIAS1, RBM22, NUP98-HOXA9, BCL11A, SP1, HNF4A, HOXA9, MLLT1, ZNF394, FOXA2, SS18, PAF1, GTF2B, MEF2C, HOXB13, KDM1A, YY1, RELA, GATA3, TAL1, MAX, NRIP1, GATA1, AGO2, HAND2, CEBPG, NR2F2, NR2F1, MYOD1, BRD2, AR, BRD4, JUND
- Target gene symbol (double-evidenced CRMs): USP25,NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000180530,
ENSG00000155313,
- Related loop:
chr21:14225000-14250000~~chr21:14950000-14975000,
chr21:14275000-14300000~~chr21:14950000-14975000,
chr21:14375000-14400000~~chr21:14950000-14975000,
chr21:14475000-14500000~~chr21:14950000-14975000,
chr21:14650000-14675000~~chr21:14950000-14975000,
chr21:14775000-14800000~~chr21:14950000-14975000,
chr21:14850000-14875000~~chr21:14950000-14975000,
chr21:14850000-14875000~~chr21:14975000-15000000,
chr21:14875000-14900000~~chr21:14975000-15000000,
chr21:14950000-14975000~~chr21:15125000-15150000,
chr21:14950000-14975000~~chr21:15150000-15175000,
chr21:14950000-14975000~~chr21:15250000-15275000,
chr21:14950000-14975000~~chr21:15275000-15300000,
chr21:14950000-14975000~~chr21:15425000-15450000,
chr21:14950000-14975000~~chr21:15450000-15475000,
chr21:14950000-14975000~~chr21:15475000-15500000,
chr21:14950000-14975000~~chr21:15525000-15550000,
chr21:14950000-14975000~~chr21:15575000-15600000,
chr21:14950000-14975000~~chr21:16125000-16150000,
chr21:14975000-15000000~~chr21:15150000-15175000,
chr21:14975000-15000000~~chr21:15175000-15200000,
chr21:14975000-15000000~~chr21:15450000-15475000,
chr21:14975000-15000000~~chr21:15725000-15750000,
chr21:14975000-15000000~~chr21:16175000-16200000,
chr21:14975000-15000000~~chr21:16550000-16575000,
chr21:14975000-15000000~~chr21:21700000-21725000,
chr21:14975000-15000000~~chr21:34500000-34525000,