- Basic information
- CohesinDB ID: CDBP00413384
- Locus: chr21-14984759-14985835
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Data sourse: GSE116344, GSE206145-NatGen2015
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Cell type: Fibroblast, RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 59%,
"15_Quies": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, PGR, SOX2, MEIS2, XBP1, FOXA1, PBX2, ZFHX2, HDGF, MEN1, ATF3, CHD7, PRDM1, CBFB, SMARCE1, MITF, TRIM28, ETV1, SNAI2, ESR1, TP73, CTCF, JUN, BAF155, GATA6, TEAD4, PDX1, TFAP2C, EED, POU2F2, CHD8, NANOG, ZNF263, POU5F1, TOP2A, CTBP1, ZBTB48, DUX4, ZSCAN5A, NONO, SRF, ZNF205, ERG, MYC, SMARCA4, EOMES, HOMEZ, RAD21, ARID1B, GRHL3, RXRA, NKX2-1, GABPA, STAT3, NKX3-1, IKZF1, DACH1, VDR, ARNTL, ZNF750, NR3C1, CEBPB, KMT2A, CREB1, GRHL2, ZHX2, SPI1, HDAC2, GATA2, ZNF644, SIX2, FLI1, NCOA2, RUNX1, SMC1A, MAFG, CEBPA, NKX2-2, SIN3A, ZFX, SMAD3, TWIST1, CREBBP, IRF2, ZNF384, RUNX2, SMAD2, ARNT, PBX4, SOX11, ATF2, PRDM9, ZNF48, SMAD4, FOS, CDK8, SUPT5H, MED1, ZEB1, TEAD3, PIAS1, C11orf30, RBM22, MAFK, BCL11A, SP1, REST, ZNF479, ARID1A, ASH2L, PHIP, BCOR, FOXP1, ZNF316, FOXA2, PAF1, MIER2, ZSCAN16, WT1, MAFF, FOXF1, HOXB13, RELA, NEUROD1, ISL1, HIF1A, OTX2, GATA3, TAL1, MAX, NRIP1, ZNF143, AGO2, GATA1, HAND2, CEBPG, NCOA3, NEUROG2, PKNOX1, NFKB1, MYOD1, EGR2, PHOX2B, T, BRD2, AR, PAX3-FOXO1, EGLN2, ZBTB26, HSF1, NOTCH3, BRD4, SCRT1, JUND, CLOCK, ZNF440, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): USP25,NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 24
- Number of somatic mutations (non-coding): 8
- Related genes and loops
- Related gene:
ENSG00000180530,
ENSG00000155313,
- Related loop:
chr21:14850000-14875000~~chr21:14975000-15000000,
chr21:14875000-14900000~~chr21:14975000-15000000,
chr21:14975000-15000000~~chr21:15150000-15175000,
chr21:14975000-15000000~~chr21:15175000-15200000,
chr21:14975000-15000000~~chr21:15450000-15475000,
chr21:14975000-15000000~~chr21:15725000-15750000,
chr21:14975000-15000000~~chr21:16175000-16200000,
chr21:14975000-15000000~~chr21:16550000-16575000,
chr21:14975000-15000000~~chr21:21700000-21725000,
chr21:14975000-15000000~~chr21:34500000-34525000,