- Basic information
- CohesinDB ID: CDBP00413402
- Locus: chr21-15043805-15044171
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Data sourse: ENCSR153HNT
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Cell type: K-562
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
52% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 70%,
"15_Quies": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, SOX2, FOXA1, SRSF4, ZFHX2, MEN1, CTCFL, PRDM1, PAX5, CDX2, TRIM28, RCOR2, ESR1, JUN, CTCF, BAF155, PRDM4, PDX1, TOP2A, DUX4, SRF, DDX5, ERG, HOXC5, MYC, ONECUT1, HOMEZ, RAD21, ARID1B, GRHL3, NKX2-1, GABPA, STAT3, RCOR1, NFE2, NR3C1, CEBPB, STAT5B, KMT2A, ZNF652, SPI1, IRF1, GATA2, ZNF644, FLI1, MXI1, MRTFB, RUNX1, THAP11, SMC1A, MAFG, CEBPA, NKX2-2, ERG3, SMARCC1, RARA, NOTCH1, CDK6, PBX4, DAXX, ARNT, PRDM9, HMBOX1, FOXM1, MAFB, FOS, CDK8, SUPT5H, MED1, CEBPD, MYB, ZNF264, ZMYM3, PIAS1, ZNF558, C11orf30, RBM22, MAFK, BCL11A, NUP98-HOXA9, HNF4A, RBM25, POU2F3, HOXA9, SRSF9, PHIP, FOXP1, PRDM6, SMC3, MLLT1, PPARG, FOXA2, PAF1, GTF2B, MAFF, ZBTB33, CDK9, HOXB13, KDM1A, JUNB, ZFP36, HIF1A, GATA3, TAL1, MAX, GATA1, AGO2, CEBPG, BCL11B, NEUROG2, TP53, PKNOX1, MYOD1, EGR2, PHOX2B, ELF3, KAT8, AR, HSF1, IKZF2, BRD4, JUND, ZZZ3, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops