- Basic information
- CohesinDB ID: CDBP00413412
- Locus: chr21-15071057-15071570
-
Data sourse: ENCSR000BLD, ENCSR000BTU, GSE105028, ENCSR000ECE, GSE68388, GSE83726, GSE116344
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Cell type: H1-hESC, RH4, Ishikawa, HuCC-T1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: Rad21,SMC1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
52% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 87%,
"14_ReprPCWk": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, CHD8, TBL1X, MYCN, SIN3A, ZFX, KDM4C, ZNF534, SMAD3, SRF, TBP, ERG, RELA, RAD21, GRHL3, HIF1A, ARNT, APC, MAX, MITF, CEBPB, TEAD3, ELF1, TRIM28, KMT2A, EZH2, ESR1, TP53, OCA2, GRHL2, CTCF, USF1, SPI1, BCL11A, E2F6, NOTCH3, MXI1, TEAD4, GTF2F1
- Target gene symbol (double-evidenced CRMs): SAMSN1,USP25,HSPA13
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000155304,
ENSG00000155307,
ENSG00000155313,
- Related loop:
chr21:14253183-14254696~~chr21:15062247-15066667,
chr21:14259014-14260613~~chr21:15062794-15066469,
chr21:14375000-14400000~~chr21:15050000-15075000,
chr21:14375000-14400000~~chr21:15075000-15100000,
chr21:14400000-14425000~~chr21:15050000-15075000,
chr21:14525000-14550000~~chr21:15050000-15075000,
chr21:14850000-14875000~~chr21:15050000-15075000,
chr21:14862220-14865605~~chr21:15064456-15067091,
chr21:14862240-14865713~~chr21:15062575-15066369,
chr21:14862269-14865635~~chr21:15064553-15067078,
chr21:14862528-14865734~~chr21:15064383-15066714,
chr21:14863074-14865706~~chr21:15062524-15066377,
chr21:14863114-14865715~~chr21:15062247-15066667,
chr21:14863229-14865687~~chr21:15063337-15066739,
chr21:14866302-14867752~~chr21:15062794-15066469,
chr21:14875000-14900000~~chr21:15050000-15075000,
chr21:14878983-14881740~~chr21:15064456-15067091,
chr21:14900000-14925000~~chr21:15050000-15075000,
chr21:15050000-15075000~~chr21:15200000-15225000,
chr21:15050000-15075000~~chr21:15225000-15250000,
chr21:15050000-15075000~~chr21:15425000-15450000,
chr21:15050000-15075000~~chr21:15475000-15500000,
chr21:15050000-15075000~~chr21:15550000-15575000,
chr21:15050000-15075000~~chr21:15825000-15850000,
chr21:15062163-15066356~~chr21:15482418-15484253,
chr21:15062193-15066426~~chr21:15482133-15484587,
chr21:15062205-15066426~~chr21:15482183-15484335,
chr21:15062223-15066649~~chr21:15482380-15484257,
chr21:15062247-15066667~~chr21:15482157-15484375,
chr21:15062524-15066377~~chr21:15482195-15484456,
chr21:15062529-15066349~~chr21:15482321-15484221,
chr21:15062531-15066418~~chr21:15482135-15484281,
chr21:15062575-15066369~~chr21:15482132-15484427,
chr21:15062585-15066485~~chr21:15482230-15484353,
chr21:15062590-15066457~~chr21:15482560-15484272,
chr21:15062613-15066552~~chr21:15482262-15484309,
chr21:15062794-15066469~~chr21:15482537-15484345,
chr21:15064456-15067091~~chr21:15482170-15484279,
chr21:15064511-15066370~~chr21:15482164-15484373,
chr21:15064549-15066726~~chr21:15482189-15484221,
chr21:15065167-15066394~~chr21:15482181-15484302,
chr21:15075000-15100000~~chr21:15200000-15225000,
chr21:15075000-15100000~~chr21:15450000-15475000,