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Basic information

CohesinDB ID: CDBP00413414

Locus: chr21-15076585-15077061

Data sourse: ENCSR230ZWH, ENCSR404BPV, ENCSR917QNE

Cell type: Neurons-H1, Liver

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SMC3,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 52% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 94%, "14_ReprPCWk": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: AR, MED1, NR3C1, PGR, GATA2, CEBPB, FOXA2, SP1, BAF155, KMT2A, PIAS1, RAD21, RXRA, FOXA1, JUN, NKX3-1, FOS, EP300, HNF4G, HNF4A

Target gene symbol (double-evidenced CRMs): HSPA13

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 1

Related genes and loops

Related gene: ENSG00000155304,

eachgene

Deatailed information for cohesin site CDBP00413414