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Basic information

CohesinDB ID: CDBP00413415

Locus: chr21-15079366-15079615

Data sourse: GSE116344, GSE83726

Cell type: RH4

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 52% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 95%, "14_ReprPCWk": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: ZNF660, SOX2, XBP1, FOXA1, ATF3, ZNF362, PRDM1, ZNF189, ZNF629, TRIM28, KLF10, ESR1, EP300, BAF155, DPF2, TEAD4, FOXA3, PDX1, EED, POU2F2, CHD8, POU5F1, MYCN, TOP2A, ZSCAN21, ZBTB17, ZNF317, STAT1, HIC1, ERG, ZBTB21, MYC, TSHZ1, GRHL3, STAT3, RCOR1, ZNF639, CEBPB, KMT2A, CREB1, KLF8, FEZF1, EBF3, GATA2, SIX2, FLI1, SMC1A, ZBTB24, MAFG, ZFP37, TBX3, TWIST1, PRDM10, GATA4, OSR2, ZNF184, SP3, PBX4, ATF2, ZNF518A, CBFA2T3, MAFB, SP2, FOS, ZEB1, MYB, PIAS1, BCL11A, GLIS2, PRDM6, ZNF394, FOXA2, CHD2, ZNF692, MAFF, HOXB13, KDM1A, YY1, RELA, NEUROD1, ISL1, HIF1A, OTX2, GATA3, TAL1, MAX, GATA1, HAND2, TLE3, CEBPG, BCL11B, SP7, TCF7L2, PHOX2B, BRD2, AR, PAX3-FOXO1, ZNF366, ZBTB42, ZNF280D, HSF1, NOTCH3, JUND, BRD4, CLOCK, ZSCAN23, TBX2, AHR

Target gene symbol (double-evidenced CRMs): HSPA13

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000155304,

eachgene

Deatailed information for cohesin site CDBP00413415