- Basic information
- CohesinDB ID: CDBP00413418
- Locus: chr21-15084460-15085231
-
Data sourse: GSE116344, ENCSR054FKH, GSE120943, GSE72082
-
Cell type: RH4, Monocytes, Hep-G2
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Rad21,SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
52% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 89%,
"7_Enh": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: NFIA, POU2F2, CHD8, FOXA2, MYCN, HMG20A, POU5F1, SOX13, NME2, FOXA1, TWIST1, KDM1A, RELA, NFIC, GATA4, RAD21, ISL1, GRHL3, ARNT, ATF2, GATA3, SMAD4, XRCC5, ZSCAN4, GATA1, HAND2, MED1, ZNF736, MYOG, TEAD1, HNRNPL, KMT2A, CREB1, OCA2, PAX3-FOXO1, IRF1, GATA6, SOX5, AR, GATA2, ATF7, NOTCH3, JUND, BRD4, NR1H3, TEAD4, TBX2, TFAP2C
- Target gene symbol (double-evidenced CRMs): HSPA13
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops