- Basic information
- CohesinDB ID: CDBP00413420
- Locus: chr21-15106931-15107075
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Data sourse: GSE120943, GSE98367
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Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
52% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 95%,
"7_Enh": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, CHD8, CEBPA, MYCN, MEIS1, MEIS2, MEF2C, PBX2, CDK9, TWIST1, ERG, KDM1A, RELA, LYL1, SMARCA4, ARID1B, ISL1, CHD7, GRHL3, GATA3, TAL1, FOXM1, SMARCE1, GATA1, CDK8, IKZF1, HAND2, MED1, CEBPB, DIDO1, TRIM28, MYB, LMO2, PKNOX1, PHOX2B, TCF12, SPI1, BCL11A, GATA2, POU2F3, RNF2, BRD4, SMARCA5, TCF3, TBX2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops