- Basic information
- CohesinDB ID: CDBP00413422
- Locus: chr21-15121385-15122806
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Data sourse: GSE206145-GSE177045, ENCSR230ZWH, GSE72082, ENCSR501LQA, ENCSR150EFU, GSE105028, GSE25021, ENCSR000EDW, ENCSR917QNE, GSE76893, ENCSR703TNG, GSE116344, ENCSR895JMI, ENCSR000EEG, ENCSR338DUC, ENCSR193NSH, ENCSR768DOX, ENCSR000BLS, GSE206145, ENCSR981FDC, ENCSR247LSH, ENCSR495WGO, GSE97394, ENCSR000BTQ, ENCSR167MTG, ENCSR853VWZ, ENCSR335RKQ, ENCSR054FKH, ENCSR153HNT, GSE68388, ENCSR748MVX, GSE64758
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Cell type: MCF-7, H1-hESC, RPE, RH4, Hep-G2, A-549, HUES64, K-562, Liver, HuCC-T1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 8% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.878
- Subunit: NIPBL,SA1,Rad21,SMC1,Mau2,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
52% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 42%,
"7_Enh": 37%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, FOSL1, PGR, HMG20A, SOX2, HNF1A, FOXA1, HLF, RBFOX2, RXRB, HNRNPK, TFAP4, ATF3, NFIC, THRB, CHD7, PRDM1, MXD4, SMARCE1, PAX5, TEAD1, TRIM28, ELF1, KLF6, ETV1, RCOR2, ESR1, ZNF217, OCA2, HNF1B, JUN, TCF12, EP300, SOX5, FOXA3, ZNF175, GATAD2A, EHMT2, RBPJ, GTF2F1, MLX, JARID2, PDX1, NANOG, CHD8, POU5F1, TOP2A, CTBP1, GATAD1, SAP130, ARID3A, HNF4G, HOXC5, ERG, ASCL1, ETS1, HOMEZ, RAD21, GRHL3, RXRA, NKX2-1, MCRS1, STAT3, XRCC5, ZNF614, NKX3-1, MIER3, NR2F6, NR3C1, ESRRA, CREB1, CCAR2, GRHL2, ZNF652, SPI1, MIXL1, TFE3, ZSCAN2, IRF1, HDAC2, GATA2, ZNF644, MXD3, DRAP1, ZGPAT, NFIL3, NCOA2, ETV5, THAP11, BCL6, CEBPA, NKX2-2, SOX13, ZFX, SIN3A, SMAD3, CBX8, TBX3, SP5, SMARCC1, MYBL2, RARA, PRPF4, CREBBP, ZNF133, RUNX2, GATA4, DAXX, ARNT, PBX4, BACH1, ZNF48, SMAD4, MAFB, CHD1, FOS, HMGXB4, MED1, TEAD3, PIAS1, ZNF3, KLF9, MAFK, SP1, BCL11A, HNF4A, IKZF5, REST, RBM25, ASH2L, BCOR, FOXP1, NCOR2, SKI, PPARG, FOXA2, RBBP5, CREM, MIER2, MAFF, FOXF1, TCF7, ZNF580, KDM1A, YY1, RELA, AHR, ZFP36, HIF1A, GATA3, TAL1, MAX, NRIP1, ZNF143, CEBPG, KLF4, NCOA3, NR2F2, ZNF687, MYOD1, ELF3, BRD2, KAT8, PHF5A, NFKBIZ, AR, PAX3-FOXO1, ARID4B, BHLHE40, ZBTB26, NOTCH3, BRD4, JUND, CUX1, DMAP1, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops