- Basic information
- CohesinDB ID: CDBP00413423
- Locus: chr21-15128295-15129126
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Data sourse: GSE93080, ENCSR000DZP, GSE98367, ENCSR000BMY, GSE50893
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Cell type: GM12892, GM2610, GM19240, GM12878, GM2588, GM12891, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: SMC3,Rad21,SA1,SMC1
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
52% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 76%,
"5_TxWk": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, SMC1A, FOXA2, ZFX, MTA2, DUX4, FOXA1, ERG3, CDK9, HNF4G, PRDM10, RELA, THRB, MYC, CDK6, RAD21, ISL1, GRHL3, HIF1A, SKIL, RXRA, OTX2, MAX, SPIB, CDK8, MED1, VDR, CEBPB, NR2F2, TRIM28, ESR1, ELF3, CTCF, SP1, SPI1, TBX21, HNF4A, IKZF5, GATA2, ZNF479, ZNF644, IKZF2, BRD4, RELB
- Target gene symbol (double-evidenced CRMs): NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops