- Basic information
- CohesinDB ID: CDBP00413424
- Locus: chr21-15132673-15133365
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Data sourse: ENCSR000BTQ, GSE206145-GSE177045, GSE72082, GSE76893, ENCSR703TNG
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL,Rad21,Mau2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
52% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 72%,
"5_TxWk": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, SMC1A, POU5F1, SIN3A, TEAD4, CTBP1, FOXA1, RELA, ZXDC, CREBBP, USP7, NEUROD1, BMI1, RAD21, PRDM1, NFIB, ARNT, OTX2, GATA3, SMARCE1, FOXM1, NRIP1, FOS, GATA1, RCOR1, MTA1, MED1, NR3C1, NCOA3, NR2F2, TEAD1, TRIM28, CREB1, NR2F1, TFAP2C, ZNF217, ESR1, LMO2, GRHL2, TCF12, NIPBL, EP300, TFAP2A, SPI1, AR, DPF2, HDAC2, ZNF579, ZBTB40, GATAD2B, CTBP2, SMARCA5, MBD2, NCOA2, AHR
- Target gene symbol (double-evidenced CRMs): NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops