- Basic information
- CohesinDB ID: CDBP00413425
- Locus: chr21-15134765-15134989
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Data sourse: GSE62063, GSE98367
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Cell type: Macrophage, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
52% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 70%,
"7_Enh": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, FOSL1, CBFA2T2, SMC1A, PGR, CEBPA, LDB1, TOP2A, MEIS1, MEIS2, STAT1, FOXA1, MEF2C, PBX2, ARID3A, HOXB13, ERG, KDM1A, RELA, LYL1, JUNB, NFIC, ARID1B, TAL1, CBFA2T3, SMARCE1, ZNF10, GATA1, CDK8, STAT3, SPIB, TP63, CDX2, PIAS1, KLF4, CEBPB, PML, TRIM28, MYB, KLF6, TCF7L2, SMAD1, KMT2A, LMO2, ELF1, PKNOX1, CREB1, KLF9, GRHL2, ESR1, EVI1, MLL, JUN, TCF12, ELF3, SPI1, BCL11A, EP300, EHF, NR4A1, AR, BAF155, DPF2, ZBTB16, GATA2, ZBTB40, GATA6, CCNT2, SOX6, FLI1, HSF1, RNF2, BRD4, JUND, TEAD4
- Target gene symbol (double-evidenced CRMs): NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops