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Basic information

CohesinDB ID: CDBP00413427

Locus: chr21-15145594-15146490

Data sourse: GSE67783, GSE86191, GSE85526, GSE206145-NatGen2015, ENCSR153HNT, ENCSR000EDE, GSE108869

Cell type: Fibroblast, HCT-116, HEKn, HeLa-S3, K-562, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.933

Subunit: SA1,Rad21,SMC1

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 52% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 91%, "5_TxWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: NFIA, TRP47, MAFG, SMC1A, FOXA2, ZSCAN16, DUX4, ZBTB48, FOXA1, SRF, CBX8, RELA, OGG1, NFIC, RAD21, PRDM1, SP140, ARNT, ATF2, FOS, NFE2, CTCF, AR, ZSCAN29

Target gene symbol (double-evidenced CRMs): NRIP1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 5

Related genes and loops

Related gene: ENSG00000180530,

eachgene

Deatailed information for cohesin site CDBP00413427