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Basic information

CohesinDB ID: CDBP00413429

Locus: chr21-15151490-15152324

Data sourse: ENCSR167MTG, ENCSR000EEG, ENCSR230ZWH, GSE72082, ENCSR000BLS, ENCSR054FKH, ENCSR917QNE

Cell type: Liver, Hep-G2

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 3% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 52% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 93%, "7_Enh": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: NFIA, HMG20A, LCORL, HNF1A, FOXA1, RXRB, KDM3A, ATF3, NFIC, ZFP64, RUNX3, PRDM1, JMJD1C, TEAD1, TRIM28, KLF6, RCOR2, EP300, SOX5, TEAD4, FOXA3, ZNF175, GATAD2A, TFAP2C, MLX, POU5F1, TOP2A, SAP130, ARID3A, HNF4G, ONECUT1, HOMEZ, RAD21, RXRA, STAT3, ZNF614, MIER3, NR2F6, CEBPB, KMT2A, CREB1, ZNF652, GABPB1, SPI1, MIXL1, TFE3, HDAC2, ZNF644, ZGPAT, NFIL3, ETV5, RUNX1, THAP11, BCL6, SMC1A, CEBPA, SOX13, SP5, SMARCC1, RARA, ARNT, ATF2, ZNF48, SMAD4, FOS, HMGXB4, MED1, TEAD3, CEBPD, ZNF3, NIPBL, SP1, HNF4A, IKZF5, REST, FOXP1, ETV4, SKI, PPARG, FOXA2, CREM, ZBTB33, TCF7, MEF2C, ZNF580, KDM1A, YY1, RELA, TARDBP, TAL1, MAX, CEBPG, NR2F2, TCF7L2, PHF5A, ELF3, KAT8, NFKBIZ, AR, ARID4B, JUND, AHR

Target gene symbol (double-evidenced CRMs): RBM11,HSPA13,NRIP1,SAMSN1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 7

Related genes and loops

Related gene: ENSG00000185272, ENSG00000155304, ENSG00000155307, ENSG00000180530,

eachgene

Deatailed information for cohesin site CDBP00413429