- Basic information
- CohesinDB ID: CDBP00413431
- Locus: chr21-15159358-15159865
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Data sourse: GSE50893, GSE98367
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Cell type: Macrophage, GM12891
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
52% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 83%,
"7_Enh": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFATC3, RUNX1, FOSL1, CBFA2T2, SMC1A, MEF2B, FOXA2, LDB1, ZNF207, CHD2, MTA3, MTA2, FOXA1, MEF2C, CDK9, MEF2A, JUNB, ATF3, NFIC, MYC, SMARCA4, GATA4, ARID1B, RUNX3, RAD21, PBX4, TCF4, NKX2-1, ATF2, CBFB, BATF, TAL1, SMARCE1, CBFA2T3, SPIB, GATA1, FOS, NFE2, CDK8, IKZF1, BACH2, VDR, CEBPB, JMJD1C, TEAD1, BCLAF1, KMT2A, MYB, ZNF217, MLL, JUN, TCF12, EP300, BCL11A, TBX21, SPI1, AR, GATA6, DPF2, GATA2, REST, IRF4, RFX5, POU2F3, RNF2, IKZF2, JUND, BRD4, TEAD4, KMT2B, FOSL2
- Target gene symbol (double-evidenced CRMs): NRIP1,HSPA13,RBM11,SAMSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000185272,
ENSG00000155304,
ENSG00000155307,
ENSG00000180530,
- Related loop:
chr21:14100000-14125000~~chr21:15150000-15175000,
chr21:14225000-14250000~~chr21:15150000-15175000,
chr21:14275000-14300000~~chr21:15150000-15175000,
chr21:14375000-14400000~~chr21:15150000-15175000,
chr21:14450000-14475000~~chr21:15150000-15175000,
chr21:14500000-14525000~~chr21:15150000-15175000,
chr21:14600000-14625000~~chr21:15150000-15175000,
chr21:14775000-14800000~~chr21:15150000-15175000,
chr21:14850000-14875000~~chr21:15150000-15175000,
chr21:14875000-14900000~~chr21:15150000-15175000,
chr21:14880552-14881691~~chr21:15164198-15165741,
chr21:14950000-14975000~~chr21:15150000-15175000,
chr21:14975000-15000000~~chr21:15150000-15175000,
chr21:15150000-15175000~~chr21:15250000-15275000,
chr21:15150000-15175000~~chr21:15275000-15300000,
chr21:15150000-15175000~~chr21:15425000-15450000,
chr21:15150000-15175000~~chr21:15450000-15475000,
chr21:15150000-15175000~~chr21:15475000-15500000,
chr21:15158984-15160931~~chr21:15205692-15207786,