Browse_each

Basic information

CohesinDB ID: CDBP00413437

Locus: chr21-15175055-15175178

Data sourse: ENCSR167MTG, GSE72082, ENCSR000BLS

Cell type: Hep-G2

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 52% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 95%, "14_ReprPCWk": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: CHD8, CEBPA, SOX13, MIER2, FOXA1, ZNF580, RARA, HOMEZ, PRDM1, OTX2, SMAD4, CEBPG, CEBPB, TRIM28, RCOR2, CTCF, MIXL1, HNF4A, ZNF644, ZBTB26, FOXP1, GATAD2A, AHR

Target gene symbol (double-evidenced CRMs): NRIP1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 1

Related genes and loops

Related gene: ENSG00000180530,

eachgene

Deatailed information for cohesin site CDBP00413437