- Basic information
- CohesinDB ID: CDBP00413438
- Locus: chr21-15179360-15179660
-
Data sourse: GSE206145, GSE206145-NatGen2015
-
Cell type: RPE, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
52% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 98%,
"14_ReprPCWk": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: AR, TLE3, GATA2, ZNF316, PIAS1, SP140, ZBTB48, FOXA1, HOXB13, BAF155, ERG
- Target gene symbol (double-evidenced CRMs): NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000180530,
- Related loop:
chr21:14100000-14125000~~chr21:15150000-15175000,
chr21:14225000-14250000~~chr21:15150000-15175000,
chr21:14275000-14300000~~chr21:15150000-15175000,
chr21:14375000-14400000~~chr21:15150000-15175000,
chr21:14450000-14475000~~chr21:15150000-15175000,
chr21:14500000-14525000~~chr21:15150000-15175000,
chr21:14600000-14625000~~chr21:15150000-15175000,
chr21:14775000-14800000~~chr21:15150000-15175000,
chr21:14850000-14875000~~chr21:15150000-15175000,
chr21:14875000-14900000~~chr21:15150000-15175000,
chr21:14950000-14975000~~chr21:15150000-15175000,
chr21:14975000-15000000~~chr21:15150000-15175000,
chr21:14975000-15000000~~chr21:15175000-15200000,
chr21:15150000-15175000~~chr21:15250000-15275000,
chr21:15150000-15175000~~chr21:15275000-15300000,
chr21:15150000-15175000~~chr21:15425000-15450000,
chr21:15150000-15175000~~chr21:15450000-15475000,
chr21:15150000-15175000~~chr21:15475000-15500000,