- Basic information
- CohesinDB ID: CDBP00413440
- Locus: chr21-15190004-15190275
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Data sourse: GSE25021, GSE86191
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Cell type: MCF-7, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
52% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 96%,
"5_TxWk": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NCOA2, RUNX1, PGR, CHD8, MAFG, SOX2, ZFX, TEAD4, MAFF, DUX4, FOXA1, CBX8, YY1, RELA, CREBBP, NFIC, GATA4, RAD21, CHD7, ARNT, PBX4, DAXX, GABPA, MECOM, MAX, FOXM1, NRIP1, ZNF143, NFE2, NR3C1, ESRRA, KLF4, CEBPB, EZH2, ESR1, C11orf30, GRHL2, CTCF, TCF12, MAFK, EP300, AR, NOTCH3, BRD4, E2F1, MAZ, SMC3, ZNF24, STAG1, ZNF316
- Target gene symbol (double-evidenced CRMs): NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops