- Basic information
- CohesinDB ID: CDBP00413454
- Locus: chr21-15243421-15243865
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Data sourse: GSE116344
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Cell type: RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
52% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 60%,
"5_TxWk": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, SOX2, NME2, MEIS2, FOXA1, RING1B, LYL1, NFIC, ZFP64, CTCFL, CHD7, MORC2, SMARCE1, ELF1, TRIM28, TEAD1, LMO2, ESR1, CTCF, TCF12, EP300, E2F6, SMC1, TEAD4, FOXA3, TFAP2C, NANOG, CHD8, MYCN, POU5F1, TOP2A, ZNF317, DUX4, ZNF300, ERG, ETS1, EOMES, RAD21, LHX2, GRHL3, PRDM14, LEF1, VDR, ARNTL, NR3C1, GRHL2, ZNF652, SPI1, GATA2, FLI1, ZNF766, NCOA2, RUNX1, CTNNB1, SMC1A, ZBTB24, POU4F2, SMAD3, TRIM22, SMARCC1, TWIST1, ZBTB2, CREBBP, RUNX2, SMAD2, ARNT, PBX4, ATF2, MAFB, MED1, PIAS1, C11orf30, MAFK, NIPBL, SP1, BCL11A, HNF4A, REST, ZNF479, POU2F3, ASH2L, CTBP2, BCOR, FOXP1, SMC3, STAG1, STAG2, ZNF207, FOXA2, HDAC6, MEIS1, MAFF, HOXB13, KDM1A, RELA, BRG1, ISL1, PCGF1, OTX2, TAL1, MAX, NRIP1, GATA1, SPIB, HAND2, TP53, MYOD1, PHOX2B, T, AR, EGR1, BRD4, JUND
- Target gene symbol (double-evidenced CRMs): NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000180530,
- Related loop:
chr21:14850000-14875000~~chr21:15225000-15250000,
chr21:14875000-14900000~~chr21:15225000-15250000,
chr21:15050000-15075000~~chr21:15225000-15250000,
chr21:15225000-15250000~~chr21:15325000-15350000,
chr21:15225000-15250000~~chr21:15475000-15500000,
chr21:15225000-15250000~~chr21:15575000-15600000,
chr21:15241231-15243395~~chr21:15482135-15484281,
chr21:15241270-15243173~~chr21:15482132-15484452,
chr21:15241276-15243465~~chr21:15482195-15484456,
chr21:15241283-15243250~~chr21:15482132-15484427,
chr21:15241373-15243243~~chr21:15482146-15484453,
chr21:15241397-15243028~~chr21:15482560-15484272,
chr21:15241460-15243206~~chr21:15482380-15484257,
chr21:15241480-15242846~~chr21:15591261-15593479,
chr21:15241502-15243395~~chr21:15482514-15484425,
chr21:15241513-15243090~~chr21:15482335-15484203,
chr21:15241528-15242919~~chr21:15482449-15484099,
chr21:15241528-15243057~~chr21:15520218-15521612,