- Basic information
- CohesinDB ID: CDBP00413455
- Locus: chr21-15244900-15245256
-
Data sourse: ENCSR703TNG, GSE25021, GSE72082, GSE206145-GSE177045
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
52% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 72%,
"5_TxWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, AR, MED1, CREBBP, ESRRA, RAD21, ESR1, HIF1A, GRHL2, GATA3, FOXA1, NCOA2, NRIP1
- Target gene symbol (double-evidenced CRMs): NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000180530,
- Related loop:
chr21:14850000-14875000~~chr21:15225000-15250000,
chr21:14875000-14900000~~chr21:15225000-15250000,
chr21:14950000-14975000~~chr21:15250000-15275000,
chr21:15050000-15075000~~chr21:15225000-15250000,
chr21:15150000-15175000~~chr21:15250000-15275000,
chr21:15225000-15250000~~chr21:15325000-15350000,
chr21:15225000-15250000~~chr21:15475000-15500000,
chr21:15225000-15250000~~chr21:15575000-15600000,
chr21:15241231-15243395~~chr21:15482135-15484281,
chr21:15241270-15243173~~chr21:15482132-15484452,
chr21:15241276-15243465~~chr21:15482195-15484456,
chr21:15241283-15243250~~chr21:15482132-15484427,
chr21:15241373-15243243~~chr21:15482146-15484453,
chr21:15241397-15243028~~chr21:15482560-15484272,
chr21:15241460-15243206~~chr21:15482380-15484257,
chr21:15241480-15242846~~chr21:15591261-15593479,
chr21:15241502-15243395~~chr21:15482514-15484425,
chr21:15241513-15243090~~chr21:15482335-15484203,
chr21:15241528-15242919~~chr21:15482449-15484099,
chr21:15241528-15243057~~chr21:15520218-15521612,
chr21:15250000-15275000~~chr21:15425000-15450000,
chr21:15250000-15275000~~chr21:15450000-15475000,