- Basic information
- CohesinDB ID: CDBP00413456
- Locus: chr21-15249402-15250141
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Data sourse: GSE116344, ENCSR153HNT, GSE83726
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Cell type: K-562, RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
49% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 66%,
"7_Enh": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, CBFA2T2, POU5F1, MYCN, SIN3A, RELA, HDGF, ASCL1, JUNB, RUNX2, MYC, SMARCA4, ARID1B, RAD21, HIF1A, PRDM9, HMBOX1, SMARCE1, TAL1, CBFA2T3, PAX5, IKZF1, MED1, ZNF592, MYOG, RBM39, NFE2L2, EZH2, MYOD1, STAT5A, JUN, TCF12, BRD2, EP300, AR, PAX3-FOXO1, DPF2, YAP1, REST, GATA2, TRIM24, NCOR1, JUND, BRD4, TEAD4, ZNF175, MYF5, EHMT2
- Target gene symbol (double-evidenced CRMs): NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000180530,
- Related loop:
chr21:14850000-14875000~~chr21:15225000-15250000,
chr21:14875000-14900000~~chr21:15225000-15250000,
chr21:14950000-14975000~~chr21:15250000-15275000,
chr21:15050000-15075000~~chr21:15225000-15250000,
chr21:15150000-15175000~~chr21:15250000-15275000,
chr21:15225000-15250000~~chr21:15325000-15350000,
chr21:15225000-15250000~~chr21:15475000-15500000,
chr21:15225000-15250000~~chr21:15575000-15600000,
chr21:15250000-15275000~~chr21:15425000-15450000,
chr21:15250000-15275000~~chr21:15450000-15475000,