- Basic information
- CohesinDB ID: CDBP00413459
- Locus: chr21-15255710-15256444
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Data sourse: ENCSR000BTQ, GSE206145-GSE177045, GSE72082, GSE138405, GSE76893, GSE120943, ENCSR703TNG, GSE25021, GSE116344
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Cell type: MCF-7, Hela-Kyoto, RH4, Monocytes
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC1,SA2,Mau2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 89%,
"5_TxWk": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, SMC1A, CHD8, CEBPA, ZSCAN5D, FOXA2, ZFX, SMAD3, FOXA1, FOXF1, CDK9, TBP, SMARCC1, YY1, RELA, CREBBP, RAD21, HIF1A, OTX2, NKX2-1, GATA3, NRIP1, FOS, GATA1, IKZF1, ARNTL, CEBPB, NCOA3, NR2F2, TEAD1, ESR1, NCOA1, CTCF, SPI1, AR, PAX3-FOXO1, GATA2, FLI1, ZBTB26, NOTCH3, BRD4, JUND, NCOA2, STAG1, TFAP2C, FOSL2
- Target gene symbol (double-evidenced CRMs): NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops