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Basic information

CohesinDB ID: CDBP00413461

Locus: chr21-15276353-15276608

Data sourse: ENCSR230ZWH, ENCSR000ECS, GSE68388

Cell type: Liver, HeLa-S3, HuCC-T1

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: SMC3,Rad21,SMC1

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 47% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 86%, "7_Enh": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: PGR, SOX2, FOXA1, LYL1, TEAD1, TRIM28, ELF1, LMO2, ESR1, JUN, TCF12, EP300, BAF155, GATA6, PDX1, TFAP2C, NANOG, CHD8, TOP2A, ERG, ONECUT1, MYC, EOMES, SMARCA4, RAD21, GRHL3, NKX2-1, STAT3, NKX3-1, IKZF1, ZNF750, CEBPB, GRHL2, SPI1, GATA2, RUNX1, MAFG, CEBPA, NKX2-2, SMAD3, CBX8, RUNX2, ARNT, PBX4, ATF2, MAFB, FOS, CDK8, MED1, TEAD3, CEBPD, MYB, PIAS1, C11orf30, EVI1, MAFK, BCL11A, NR4A1, ATF7, POU2F3, SMC3, STAG1, FOXA2, EBF1, MEIS1, GTF2B, MAFF, CDK9, KDM1A, RELA, JUNB, HIF1A, OTX2, GATA3, TAL1, MAX, GATA1, CEBPG, NCOA3, NR2F2, MYOD1, AR, EGLN2, BRD4, ZNF316

Target gene symbol (double-evidenced CRMs): NRIP1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000180530,

eachgene

Deatailed information for cohesin site CDBP00413461