- Basic information
- CohesinDB ID: CDBP00413462
- Locus: chr21-15281015-15281332
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Data sourse: ENCSR000BLD, GSE72082, ENCSR000BKV, GSE25021, ENCSR000BLY, ENCSR000BLS, GSE105028, ENCSR000ECE, GSE131606
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Cell type: H1-hESC, Hep-G2, DKO, SK-N-SH, K-562, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 78%,
"9_Het": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF92, ZNF133, CHD8, GATA1, ZNF182, TRIM28, GFI1B, RAD21, PRDM1, PBX4, NOTCH3, IKZF1, CTCF, PRDM10, USF1, SPI1, MITF
- Target gene symbol (double-evidenced CRMs): NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000180530,
- Related loop:
chr21:14850000-14875000~~chr21:15275000-15300000,
chr21:14875000-14900000~~chr21:15275000-15300000,
chr21:14950000-14975000~~chr21:15275000-15300000,
chr21:15150000-15175000~~chr21:15275000-15300000,
chr21:15275000-15300000~~chr21:15375000-15400000,
chr21:15275000-15300000~~chr21:15400000-15425000,
chr21:15275000-15300000~~chr21:15425000-15450000,
chr21:15275000-15300000~~chr21:15450000-15475000,
chr21:15275000-15300000~~chr21:15475000-15500000,