- Basic information
- CohesinDB ID: CDBP00413463
- Locus: chr21-15282742-15283004
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Data sourse: ENCSR230ZWH, ENCSR917QNE
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Cell type: Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 92%,
"9_Het": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, PGR, NANOG, BCL6, FOXA2, CHD8, POU2F2, SOX13, FOXA1, FOXF1, ZBTB33, TCF7, HOXB13, HNF4G, HOXC5, YY1, RELA, ERG, KDM1A, ZNF300, ZNF384, JUNB, ASCL1, RUNX2, NFIC, MYC, BRG1, HOMEZ, RAD21, PBX4, HIF1A, GRHL3, ARNT, RXRA, NRF1, SOX11, STAT3, TAL1, PAX5, NKX3-1, FOS, CDX2, TLE3, NR3C1, CEBPB, ESRRA, NR2F2, TRIM28, ETV1, PIAS1, EZH2, ESR1, NFKB1, MYOD1, JUN, ZHX2, ELF3, SP1, EP300, BAF155, HNF4A, AR, ARRB1, GATA2, ARID1A, SIX2, BRD4, FOXP1, TEAD4, FOXA3, NCOR2, GATAD2A
- Target gene symbol (double-evidenced CRMs): NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000180530,
- Related loop:
chr21:14850000-14875000~~chr21:15275000-15300000,
chr21:14875000-14900000~~chr21:15275000-15300000,
chr21:14950000-14975000~~chr21:15275000-15300000,
chr21:15150000-15175000~~chr21:15275000-15300000,
chr21:15275000-15300000~~chr21:15375000-15400000,
chr21:15275000-15300000~~chr21:15400000-15425000,
chr21:15275000-15300000~~chr21:15425000-15450000,
chr21:15275000-15300000~~chr21:15450000-15475000,
chr21:15275000-15300000~~chr21:15475000-15500000,