Browse_each

Basic information

CohesinDB ID: CDBP00413464

Locus: chr21-15289229-15290867

Data sourse: ENCSR000BLD, ENCSR167MTG, ENCSR338DUC, GSE67783, GSE72082, GSE86191, GSE111913, ENCSR000BLS, GSE105028, GSE206145-NatGen2015, ENCSR000ECE, ENCSR054FKH, GSE206145, ENCSR153HNT, GSE116344, GSE131606, GSE38411

Cell type: RPE, H1-hESC, Fibroblast, HCT-116, RH4, Hep-G2, RT-112, K-562, BCBL-1, HSPC, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 5% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.878

Subunit: SA1,Rad21,SA2,SMC1

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 47% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 61%, "7_Enh": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, TRP47, POU2F2, TBL1X, POU5F1, MYCN, ZFX, ZBTB48, WT1, YY1, RELA, OGG1, ATF3, MYC, SP140, GRHL3, CBFB, STAT3, CEBPB, HNRNPL, ESR1, CTCF, AR, HSF1, AATF, STAG1

Target gene symbol (double-evidenced CRMs): NRIP1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 4

Related genes and loops

Related gene: ENSG00000180530,

eachgene

Deatailed information for cohesin site CDBP00413464