Deatailed information for cohesin site CDBP00413467
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- Basic information
- CohesinDB ID: CDBP00413467
- Locus: chr21-15295909-15296124
- Data sourse: ENCSR153HNT
- Cell type: K-562
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
- Compartment: 47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 88%,
"5_TxWk": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene: ENSG00000180530,
- Related loop: chr21:14850000-14875000~~chr21:15275000-15300000, chr21:14866344-14867733~~chr21:15291005-15294045, chr21:14875000-14900000~~chr21:15275000-15300000, chr21:14950000-14975000~~chr21:15275000-15300000, chr21:15150000-15175000~~chr21:15275000-15300000, chr21:15275000-15300000~~chr21:15375000-15400000, chr21:15275000-15300000~~chr21:15400000-15425000, chr21:15275000-15300000~~chr21:15425000-15450000, chr21:15275000-15300000~~chr21:15450000-15475000, chr21:15275000-15300000~~chr21:15475000-15500000, chr21:15300000-15325000~~chr21:15400000-15425000,
Tools:
- Assay
