- Basic information
- CohesinDB ID: CDBP00413473
- Locus: chr21-15324386-15325045
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Data sourse: ENCSR230ZWH, ENCSR917QNE
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Cell type: Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 90%,
"7_Enh": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA2, CEBPA, SOX13, MAFF, DUX4, FOXA1, ZBTB33, RXRB, ARID3A, HOXB13, HNF4G, ERG, YY1, KDM1A, RARA, ATF3, ONECUT1, SMARCA4, HOMEZ, RAD21, CHD7, GRHL3, RXRA, GABPA, MAX, NR2F6, NR2F2, RCOR2, ESR1, ZNF652, SP1, EP300, HNF4A, SOX5, REST, JUND, NFIL3, FOXA3, GATAD2A
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops