- Basic information
- CohesinDB ID: CDBP00413479
- Locus: chr21-15340572-15340960
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Data sourse: ENCSR000BLD, ENCSR167MTG, GSE206145-GSE177045, GSE72082, GSE76893, ENCSR000BLS, GSE105028, ENCSR000ECE, ENCSR054FKH, ENCSR000EDE, GSE68388, ENCSR703TNG, GSE25021, GSE50893, ENCSR000ECS
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Cell type: MCF-7, GM2630, H1-hESC, Hep-G2, HeLa-S3, HuCC-T1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 95%,
"9_Het": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRIM28, CTCF, ZNF644
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops