- Basic information
- CohesinDB ID: CDBP00413480
- Locus: chr21-15342302-15343313
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Data sourse: GSE206145-GSE177045, GSE72082, GSE76893, ENCSR703TNG, GSE25021
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL,SA1,Rad21,Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 93%,
"7_Enh": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NCOA2, FOXO1, PGR, SMC1A, MAFG, ZNF316, SIN3A, ID3, CTBP1, DUX4, MAFF, FOXA1, ERG, RELA, CREBBP, ZXDC, MYC, RUNX2, RAD21, LHX2, NRF1, ARNT, HIF1A, NFIB, PBX4, GATA3, BACH1, FOXM1, NRIP1, FOS, GATA1, IKZF1, NFE2, MED1, NR3C1, ESRRA, ZNF592, NCOA3, NR2F2, TEAD1, CEBPB, CREB1, NFE2L2, ZNF217, ESR1, ZNF687, C11orf30, GRHL2, NFE2L1, JUN, TCF12, MAFK, EP300, NIPBL, AR, ZSCAN2, DPF2, GATA2, GATAD2B, EGLN2, ATF7, CTBP2, SMARCA5, MBD2, JUND, CUX1, BRD4, TEAD4, NCOR2, ZNF24, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops