- Basic information
- CohesinDB ID: CDBP00413481
- Locus: chr21-15351778-15352388
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Data sourse: ENCSR167MTG, ENCSR000EEG, ENCSR338DUC, GSE72082, ENCSR000BLS, ENCSR054FKH, GSE25021, ENCSR000EDW
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Cell type: Hep-G2
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC3,Rad21,SA2,SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 96%,
"7_Enh": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, CHD8, PPARG, CEBPA, HMG20A, FOXA2, SOX13, ZFX, MIER2, GTF2F1, FOXA1, GATAD1, SAP130, RBFOX2, RXRB, TBP, KDM1A, ZNF19, RELA, RARA, RUNX2, MYC, HOMEZ, RAD21, ISL1, ZNF48, SMAD4, MXD4, XRCC5, ZNF614, MAX, HMGXB4, MIER3, HNRNPH1, HAND2, CEBPG, TEAD3, TEAD1, ZNF573, CREB1, U2AF1, TBL1XR1, ESR1, USF2, GABPB1, ELF3, KAT8, USF1, MIXL1, HNF4A, AR, SOX5, TFE3, IKZF5, ZNF644, FLI1, ASH2L, ZBTB26, NOTCH3, SCRT1, DRAP1, NFIL3, TEAD4, FOXA3, GATAD2A, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops