- Basic information
- CohesinDB ID: CDBP00413485
- Locus: chr21-15370522-15371554
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Data sourse: ENCSR000BTQ, GSE206145-GSE177045, GSE72082, GSE76893, ENCSR703TNG
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL,Rad21,Mau2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 90%,
"5_TxWk": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, SMC1A, CHD8, FOXA2, NKX2-2, SOX2, SIN3A, CTBP1, FOXA1, KDM1A, RELA, ZXDC, PBX1, CREBBP, AHR, SMARCA4, RAD21, HIF1A, GATA3, STAT3, MAX, FOXM1, NRIP1, MITF, MED1, NR3C1, NCOA3, TEAD1, NR2F2, KMT2A, CREB1, TP53, PKNOX1, ESR1, T, EP300, NIPBL, AR, DPF2, REST, SIX2, POU2F3, HSF1, CTBP2, TCF3, MBD2, NCOA2, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops