- Basic information
- CohesinDB ID: CDBP00413490
- Locus: chr21-15400953-15401699
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Data sourse: ENCSR054FKH, ENCSR917QNE, GSE72082, ENCSR167MTG
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Cell type: Liver, Hep-G2
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 84%,
"7_Enh": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SKI, PGR, CHD8, CEBPA, HMG20A, FOXA2, SOX13, POU4F2, XBP1, MIER2, SMAD3, FOXA1, ZKSCAN1, HNF4G, KDM1A, RELA, RARA, CREBBP, ATF3, MYC, HOMEZ, RAD21, ARNT, RXRA, GATA3, SMAD4, TAL1, XRCC5, MAX, NRIP1, FOS, MIER3, NR2F6, ZNF736, CEBPG, ESRRA, CEBPB, TEAD3, NR2F2, TEAD1, NR3C1, NCOA3, TBL1XR1, RCOR2, ESR1, OCA2, ELF3, RBM22, SP1, EP300, HNF4A, AR, SOX5, GATA2, ZNF644, JUND, FOXP1, NFIL3, NCOA2, FOXA3, GATAD2A, ETV5, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops