- Basic information
- CohesinDB ID: CDBP00413494
- Locus: chr21-15408013-15408583
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Data sourse: GSE50893, ENCSR000BMY
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Cell type: GM2630, GM12878, GM12891
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 84%,
"7_Enh": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, CBX5, SOX2, FOXA1, PBX2, NFIC, CHD7, RUNX3, CBFB, PAX5, TP63, TEAD1, ELF1, BCLAF1, ESR1, JUN, TCF12, EP300, BAF155, DPF2, IRF4, TFAP2C, EED, POU2F2, CHD8, POU5F1, MTA2, SRF, HNF4G, ERG, MYC, RAD21, RXRA, BATF3, GABPA, STAT3, NKX3-1, IKZF1, NR3C1, CEBPB, CREB1, GRHL2, SPI1, GATA2, SIN3A, MEF2A, CREBBP, ZBTB2, ARNT, PBX4, ATF2, FOXM1, ETV6, FOS, MED1, PML, PIAS1, STAT5A, SP1, BCL11A, HNF4A, REST, ATF7, MBD2, STAG1, MTA3, CREM, NFATC1, HOXB13, BCL3, YY1, RELA, JUNB, GATA3, BATF, TLE3, ZFP69B, NR2F2, NR2F1, TBX21, BHLHE40, AR, HSF1, IKZF2, JUND, BRD4, CUX1, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops