- Basic information
- CohesinDB ID: CDBP00413496
- Locus: chr21-15413988-15414474
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Data sourse: ENCSR000DZP, ENCSR230ZWH, GSE98367, GSE120943, GSE103477, ENCSR917QNE
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Cell type: MDM, Monocytes, GM12878, Liver, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SMC3,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 87%,
"5_TxWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SMC1A, PPARG, CEBPA, NKX2-2, MTA2, STAT1, FOXA1, MEF2C, CDK9, RELA, RAD21, PRDM1, GRHL3, PBX4, RUNX3, RXRA, BATF, IKZF1, CDK8, NFE2, MED1, CEBPB, SP1, SPI1, HNF4A, IRF1, RXR, IRF4, JUND, BRD4
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops