- Basic information
- CohesinDB ID: CDBP00413499
- Locus: chr21-15423763-15423975
-
Data sourse: ENCSR000BLD, GSE97394, GSE105028
-
Cell type: H1-hESC, HUES64, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 73%,
"7_Enh": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: NANOG, CHD8, ZNF207, POU5F1, RBBP5, BRD3, SOX2, FOXA1, CBX8, KDM1A, YY1, RELA, ERG, BRG1, RAD21, CHD7, RUNX3, MORC2, STAT3, IKZF1, MED1, PIAS1, PHOX2B, T, TCF12, BCL11A, SP1, NIPBL, EP300, SPI1, AR, HDAC2, REST, GATA2, IKZF2, JUND, BRD4, TEAD4, EED
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops