- Basic information
- CohesinDB ID: CDBP00413500
- Locus: chr21-15431069-15431422
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Data sourse: ENCSR000BLD, ENCSR167MTG, GSE72082, GSE86191, GSE110061, ENCSR000BLS, GSE105028, ENCSR000ECE, ENCSR054FKH, GSE25021, GSE97394
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Cell type: MCF-7, H1-hESC, HCT-116, Hep-G2, H9-hESC, HUES64
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 77%,
"7_Enh": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, CHD8, SMC1A, CEBPA, POU5F1, TBL1X, SOX13, ZFX, XBP1, WT1, SRF, ZNF823, RELA, ETS1, RUNX2, CDK6, HOMEZ, RAD21, GABPA, MECOM, MAX, IKZF1, MED1, CEBPG, CEBPB, JMJD1C, ETV1, KDM5B, EZH2, ESR1, NFKB1, CTCF, USF1, SPI1, BCL11A, AR, FLI1, BRD4, MAZ, SMC3, ETV5, TFAP2C
- Target gene symbol (double-evidenced CRMs): NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops