- Basic information
- CohesinDB ID: CDBP00413502
- Locus: chr21-15436096-15436440
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Data sourse: GSE206145-GSE177045
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 87%,
"5_TxWk": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, FOSL1, PGR, CBX5, HMG20A, LCORL, SOX2, MEIS2, HNF1A, FOXA1, RBFOX2, RXRB, PBX2, KDM3A, TFAP4, SIN3B, TSC22D4, LYL1, BMI1, NFIC, THRB, ZFP64, ATF3, CHD7, PRDM1, RUNX3, CBFB, MXD4, MECOM, PAX5, HDAC3, MAF, JMJD1C, TEAD1, TRIM28, ELF1, BCLAF1, ETV1, ZNF573, KLF6, ZNF217, ESR1, OCA2, LMO2, RCOR2, KLF10, USF2, JUN, TCF12, BAF155, EP300, L3MBTL4, MNT, BMAL1, SOX5, DPF2, DMAP1, IRF4, TRIM24, RAD51, RFX3, TEAD4, FOXA3, KMT2B, ZNF175, GATAD2A, PDX1, TFAP2C, EED, RBPJ, MLX, NANOG, POU2F2, CHD8, MYCN, HHEX, TOP2A, RUNX1T1, ID3, ERF, MTA2, DUX4, SRF, GATAD1, SAP130, ARID3A, TBP, HNF4G, ERG, CHD4, ZNF597, NFKB2, ETS1, MYC, HOMEZ, RAD21, ARID1B, GRHL3, RXRA, FOXK2, BATF3, GABPA, MCRS1, STAT3, ZNF614, XRCC5, NKX3-1, IKZF1, MIER3, TERF2, NR2F6, VDR, NR3C1, CEBPB, ESRRA, STAT5B, KMT2A, CREB1, CCAR2, TBL1XR1, GRHL2, ZNF652, TRPS1, GABPB1, ZHX2, SPI1, MIXL1, TFE3, HBP1, HDAC2, GATA2, INTS13, ZNF644, SSRP1, MXD3, FLI1, DRAP1, ZGPAT, NR2C2, RELB, NFIL3, NCOA2, ETV5, RUNX1, THAP11, BCL6, MAFG, CEBPA, NKX2-2, SMC1A, SOX13, AFF4, POU4F2, SIN3A, SMAD3, TBX3, SP5, TRIM22, SMARCC1, MEF2A, MYBL2, CREBBP, ZNF384, ZBTB2, NOTCH1, RARA, NFYC, RUNX2, GATA4, ARNT, PBX4, NRF1, ATF2, ZNF48, NFYA, FOXM1, ETV6, NR2C1, FOS, CDK8, HMGXB4, TGIF2, MAFB, MED1, TEAD3, PML, CEBPD, MYB, PIAS1, ZNF3, KLF9, C11orf30, SETDB1, EVI1, STAT5A, MBD1, NUP98-HOXA9, MAFK, NIPBL, SP1, BCL11A, NR4A1, HNF4A, USF1, RBM22, IKZF5, REST, ATF7, ASH2L, HOXA9, TCF3, FOXP1, SMC3, STAG1, MLLT1, ETV4, NFATC3, SKI, MEF2B, PPARG, FOXA2, MTA3, CREM, MEIS1, NFATC1, EBF1, MIER2, ZBED1, MAFF, GTF2B, FOXF1, MEF2C, TCF7, ZBTB33, CDK9, HOXB13, BCL3, ZNF580, KDM1A, YY1, RELA, FOXO3, JUNB, AHR, BRG1, ISL1, HIF1A, SKIL, GATA3, BATF, TAL1, MAX, NRIP1, ZNF143, AGO2, GATA1, HAND2, TLE3, CEBPG, NCOA3, NR2F2, TCF7L2, NR2F1, KDM5B, ZNF530, ZNF687, PKNOX1, MED, ZNF334, NFKB1, MYOD1, PHOX2B, ELF3, BRD2, KAT8, PHF5A, ARRB1, TBX21, BHLHE40, AR, ARID4B, NFKBIZ, EGLN2, EGR1, HSF1, ZBTB26, IKZF2, BRD4, JUND, SMAD4.1D12, TBX2, ZNF24, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops