- Basic information
- CohesinDB ID: CDBP00413509
- Locus: chr21-15468364-15468759
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Data sourse: GSE116344, ENCSR230ZWH, ENCSR917QNE
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Cell type: Liver, RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 83%,
"7_Enh": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, HMG20A, MYCN, NKX2-2, FOXA1, ZNF770, HOXB13, SMARCA4, ISL1, CHD7, RAD21, ARNT, HIF1A, RXRA, OTX2, MAX, ZNF614, HAND2, ARNTL, ZFP69B, NR2F2, ELF3, KAT8, SP1, PAX3-FOXO1, AR, REST, BRD4, FOXP1, TEAD4, GATAD2A
- Target gene symbol (double-evidenced CRMs): NRIP1,RBM11
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000185272,
ENSG00000180530,
- Related loop:
chr21:14225000-14250000~~chr21:15450000-15475000,
chr21:14400000-14425000~~chr21:15450000-15475000,
chr21:14775000-14800000~~chr21:15450000-15475000,
chr21:14850000-14875000~~chr21:15450000-15475000,
chr21:14875000-14900000~~chr21:15450000-15475000,
chr21:14950000-14975000~~chr21:15450000-15475000,
chr21:14975000-15000000~~chr21:15450000-15475000,
chr21:15075000-15100000~~chr21:15450000-15475000,
chr21:15125000-15150000~~chr21:15450000-15475000,
chr21:15150000-15175000~~chr21:15450000-15475000,
chr21:15200000-15225000~~chr21:15450000-15475000,
chr21:15250000-15275000~~chr21:15450000-15475000,
chr21:15275000-15300000~~chr21:15450000-15475000,