- Basic information
- CohesinDB ID: CDBP00413510
- Locus: chr21-15470766-15470841
-
Data sourse: GSE120943, GSE98367
-
Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 97%,
"5_TxWk": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: TOP2A, GRHL3
- Target gene symbol (double-evidenced CRMs): NRIP1,RBM11
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000185272,
ENSG00000180530,
- Related loop:
chr21:14225000-14250000~~chr21:15450000-15475000,
chr21:14225000-14250000~~chr21:15475000-15500000,
chr21:14250000-14275000~~chr21:15475000-15500000,
chr21:14275000-14300000~~chr21:15475000-15500000,
chr21:14375000-14400000~~chr21:15475000-15500000,
chr21:14400000-14425000~~chr21:15450000-15475000,
chr21:14400000-14425000~~chr21:15475000-15500000,
chr21:14425000-14450000~~chr21:15475000-15500000,
chr21:14450000-14475000~~chr21:15475000-15500000,
chr21:14725000-14750000~~chr21:15475000-15500000,
chr21:14775000-14800000~~chr21:15450000-15475000,
chr21:14825000-14850000~~chr21:15475000-15500000,
chr21:14850000-14875000~~chr21:15450000-15475000,
chr21:14850000-14875000~~chr21:15475000-15500000,
chr21:14875000-14900000~~chr21:15450000-15475000,
chr21:14875000-14900000~~chr21:15475000-15500000,
chr21:14950000-14975000~~chr21:15450000-15475000,
chr21:14950000-14975000~~chr21:15475000-15500000,
chr21:14975000-15000000~~chr21:15450000-15475000,
chr21:15025000-15050000~~chr21:15475000-15500000,
chr21:15050000-15075000~~chr21:15475000-15500000,
chr21:15075000-15100000~~chr21:15450000-15475000,
chr21:15125000-15150000~~chr21:15450000-15475000,
chr21:15150000-15175000~~chr21:15450000-15475000,
chr21:15150000-15175000~~chr21:15475000-15500000,
chr21:15200000-15225000~~chr21:15450000-15475000,
chr21:15200000-15225000~~chr21:15475000-15500000,
chr21:15225000-15250000~~chr21:15475000-15500000,
chr21:15250000-15275000~~chr21:15450000-15475000,
chr21:15275000-15300000~~chr21:15450000-15475000,
chr21:15275000-15300000~~chr21:15475000-15500000,
chr21:15475000-15500000~~chr21:15575000-15600000,