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Basic information

CohesinDB ID: CDBP00413511

Locus: chr21-15471943-15472539

Data sourse: ENCSR230ZWH, ENCSR917QNE

Cell type: Liver

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Rad21

CTCF binding site: CTCF CTCF motif: True

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 47% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 92%, "7_Enh": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, PGR, CHD8, FOXA1, HLF, SRF, DDX5, HNF4G, ZNF300, ZNF384, EOMES, MCM3, RAD21, GRHL3, PBX4, CHD7, RXRA, GATA3, PRDM9, NKX3-1, FOS, MED1, NR3C1, NR2F2, TEAD1, ESR1, HNF1B, CTCF, SP1, HNF4A, AR, GATA2, EGLN2, SIX2, JUND, BRD4

Target gene symbol (double-evidenced CRMs): RBM11,NRIP1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000185272, ENSG00000180530,

eachgene

Deatailed information for cohesin site CDBP00413511