- Basic information
- CohesinDB ID: CDBP00413515
- Locus: chr21-15513318-15515205
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Data sourse: GSE93080, ENCSR167MTG, ENCSR000EEG, ENCSR338DUC, ENCSR230ZWH, GSE72082, GSE76893, ENCSR000BLS, ENCSR054FKH, GSE62063, GSE116344, GSE50893, ENCSR000EDW, ENCSR917QNE
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Cell type: GM12892, RH4, Hep-G2, GM2610, GM12878, GM12891, GM19238, Liver, GM18486, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.889
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
56% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 55%,
"7_Enh": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, KMT2A, FOXA1, FOXA2
- Target gene symbol (double-evidenced CRMs): USP25
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops