- Basic information
- CohesinDB ID: CDBP00413520
- Locus: chr21-15534572-15534993
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Data sourse: ENCSR000BLD, GSE72082, GSE105028, ENCSR000ECE, ENCSR054FKH, GSE97394, GSE50893
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Cell type: GM12892, H1-hESC, Hep-G2, H9-hESC, HUES64
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
56% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 66%,
"14_ReprPCWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, NANOG, PGR, SMC1A, CEBPA, FOXA2, EBF1, TOP2A, SIN3A, ZSCAN16, FOXA1, HOXB13, ERG, KDM1A, CREBBP, PBX1, NOTCH1, LYL1, MYC, SMARCA4, RAD21, ARNT, HIF1A, GATA3, SMC3, GABPA, MECOM, TAL1, PAX5, NRIP1, IKZF1, NR3C1, ESRRA, TEAD1, NR2F2, KMT2A, MYB, TRIM28, ETV1, ELF1, LMO2, ESR1, ZNF334, EVI1, CTCF, BCL11A, TFAP2A, SPI1, BAF155, AR, ZBTB16, REST, GATA2, FLI1, HSF1, ASH2L, NOTCH3, BRD4, TCF3, FOXP1, NCOA2
- Target gene symbol (double-evidenced CRMs): NRIP1
- Function elements
- Human SNPs: Eosinophil_percentage_of_white_cells
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops