- Basic information
- CohesinDB ID: CDBP00413522
- Locus: chr21-15543487-15544405
-
Data sourse: ENCSR000BTQ, ENCSR167MTG, ENCSR000EEG, ENCSR338DUC, GSE67783, GSE72082, GSE76893, ENCSR000BLS, ENCSR054FKH, ENCSR000EDE, ENCSR153HNT, GSE25021, GSE108869, ENCSR000EDW
-
Cell type: MCF-7, Hep-G2, HeLa-S3, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
56% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 86%,
"14_ReprPCWk": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: NFIA, PGR, HMG20A, FOXA1, HLF, RXRB, KDM3A, PRDM1, MXD4, TEAD1, KLF6, RCOR2, ESR1, CTCF, EP300, SOX5, E2F6, DMAP1, FOXA3, GTF2F1, GATAD2A, RBPJ, DUX4, GATAD1, SAP130, ARID3A, ZNF300, ERG, HOMEZ, RAD21, GRHL3, GABPA, ZNF614, XRCC5, NFE2, MIER3, NR2F6, RCOR1, CEBPB, CREB1, TBL1XR1, ZNF652, GABPB1, MIXL1, TFE3, HDAC2, ZNF644, MXD3, DRAP1, ZGPAT, NFIL3, ETV5, THAP11, BCL6, SMC1A, CEBPA, SOX13, ZFX, SP5, RARA, ZBTB2, ZNF48, SMAD4, HMGXB4, TEAD3, CEBPD, RBM22, BCL11A, IKZF5, ZBTB7A, FOXP1, SMC3, STAG1, PPARG, EBF1, CHD2, MIER2, GTF2B, MEF2C, ZNF580, KDM1A, YY1, RELA, ZNF148, HIF1A, TAL1, MAX, ZNF143, CEBPG, GFI1B, ELF3, KAT8, NFKBIZ, ARID4B, ZBTB26, BRD4, IRF9, AHR
- Target gene symbol (double-evidenced CRMs): NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops