- Basic information
- CohesinDB ID: CDBP00413524
- Locus: chr21-15549401-15550208
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE138405, GSE105028, ENCSR000ECE, GSE68388, GSE116344, GSE126990, GSE115602
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Cell type: MCF-7, H1-hESC, Hela-Kyoto, RH4, HuCC-T1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SMC1,SA2,Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
56% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 88%,
"14_ReprPCWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, PGR, CTBP1, FOXA1, ERG, RELA, CREBBP, MYC, RUNX2, GATA4, NFIC, RAD21, PBX4, NFIB, GATA3, SMC3, SMARCE1, TP63, NR3C1, TEAD3, TEAD1, NCOA3, TCF7L2, EZH2, ESR1, MYOD1, TRPS1, TCF12, EP300, AR, GATA6, YAP1, GATA2, FLI1, MRTFB, TEAD4, TFAP2C
- Target gene symbol (double-evidenced CRMs): NRIP1,SAMSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000155307,
ENSG00000180530,
- Related loop:
chr21:14400000-14425000~~chr21:15550000-15575000,
chr21:14425000-14450000~~chr21:15550000-15575000,
chr21:14600000-14625000~~chr21:15550000-15575000,
chr21:14825021-14827663~~chr21:15552007-15554258,
chr21:14850000-14875000~~chr21:15525000-15550000,
chr21:14850000-14875000~~chr21:15550000-15575000,
chr21:14862220-14865605~~chr21:15552361-15554051,
chr21:14862238-14865539~~chr21:15552463-15554046,
chr21:14862528-14865734~~chr21:15552331-15554281,
chr21:14863114-14865715~~chr21:15552062-15554218,
chr21:14863116-14865733~~chr21:15552373-15554226,
chr21:14863241-14865633~~chr21:15552224-15554246,
chr21:14863273-14865535~~chr21:15552378-15554003,
chr21:14863283-14865722~~chr21:15552468-15554237,
chr21:14863404-14865534~~chr21:15552479-15554016,
chr21:14863422-14865658~~chr21:15552315-15554002,
chr21:14863640-14865671~~chr21:15552429-15553990,
chr21:14870376-14871550~~chr21:15552286-15554234,
chr21:14950000-14975000~~chr21:15525000-15550000,
chr21:15050000-15075000~~chr21:15550000-15575000,
chr21:15520136-15522073~~chr21:15552141-15554135,