- Basic information
- CohesinDB ID: CDBP00413525
- Locus: chr21-15551801-15554215
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Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR917QNE, GSE115602, GSE93080, GSE101921, ENCSR806UKK, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, ENCSR000EEG, ENCSR338DUC, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE83726, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE103477, GSE108869, GSE138405, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE76893, GSE145327, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, GSE206145-GSE177045, GSE72082, ENCSR501LQA, ENCSR404BPV, GSE105028, ENCSR000EDW, ENCSR000EFJ, ENCSR000BTU, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, ENCSR768DOX, ENCSR000BLS, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, SLK, GM19240, Liver, HuCC-T1, H9-hESC, RPE, GM2630, HMEC, Fibroblast, HEKn, Ishikawa, GM12890, HeLa-S3, GM2255, IMR-90, K-562, GM18486, DKO, GM18526, H1-hESC, SNYDER, GM18505, Lymphoblast, GM12878, GM12891, GM2588, SK-N-SH, GM19239, HeLa-Tet-On, GM19193, RT-112, HAP1, GM19099, HUES64, MCF-7, GM12892, THP-1, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, A-549, HUVEC, HCAEC, GM19238, HeLa, OCI-AML-3, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 55% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.378
- Subunit: SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
56% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 80%,
"7_Enh": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: XBP1, FOXA1, HLF, RXRB, ATF3, CTCFL, SFPQ, TRIM28, LMO2, RCOR2, OCA2, ESR1, ZFP91, CTCF, JUN, SOX5, SMC1, FOXA3, POU5F1, TOP2A, SRF, ERG, EZH1, HOMEZ, RAD21, GRHL3, RXRA, NKX2-1, GABPA, STAT3, ZNF614, IKZF1, MIER3, NR3C1, CEBPB, KMT2A, CREB1, MIXL1, GATA2, ZGPAT, NFIL3, RUNX1, THAP11, SMC1A, CEBPA, NKX2-2, SMAD3, TRIM22, ZBTB2, ZNF384, ARNT, PBX4, FOS, CDK8, HMGXB4, MED1, MYB, PIAS1, EVI1, BCL11A, HNF4A, REST, SMC3, NCOR2, STAG2, STAG1, PPARG, FOXF1, MEF2C, HOXB13, KDM1A, RELA, HIF1A, GATA3, TAL1, ZNF143, GATA1, CEBPG, TCF7L2, KDM5B, ELF3, BRD2, ARID4B, AR, ZNF579, HSF1, NOTCH3, BRD4
- Target gene symbol (double-evidenced CRMs): SAMSN1,NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000155307,
ENSG00000180530,
- Related loop:
chr21:14400000-14425000~~chr21:15550000-15575000,
chr21:14425000-14450000~~chr21:15550000-15575000,
chr21:14600000-14625000~~chr21:15550000-15575000,
chr21:14825021-14827663~~chr21:15552007-15554258,
chr21:14850000-14875000~~chr21:15525000-15550000,
chr21:14850000-14875000~~chr21:15550000-15575000,
chr21:14862220-14865605~~chr21:15552361-15554051,
chr21:14862238-14865539~~chr21:15552463-15554046,
chr21:14862528-14865734~~chr21:15552331-15554281,
chr21:14863114-14865715~~chr21:15552062-15554218,
chr21:14863116-14865733~~chr21:15552373-15554226,
chr21:14863241-14865633~~chr21:15552224-15554246,
chr21:14863273-14865535~~chr21:15552378-15554003,
chr21:14863283-14865722~~chr21:15552468-15554237,
chr21:14863404-14865534~~chr21:15552479-15554016,
chr21:14863422-14865658~~chr21:15552315-15554002,
chr21:14863640-14865671~~chr21:15552429-15553990,
chr21:14870376-14871550~~chr21:15552286-15554234,
chr21:14950000-14975000~~chr21:15525000-15550000,
chr21:15050000-15075000~~chr21:15550000-15575000,
chr21:15520136-15522073~~chr21:15552141-15554135,