- Basic information
- CohesinDB ID: CDBP00413527
- Locus: chr21-15566701-15567087
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Data sourse: ENCSR000EHW, ENCSR000EHX
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Cell type: SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
56% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 81%,
"14_ReprPCWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NANOG, CHD2, SOX2, DUX4, FOXA1, DDX5, TWIST1, SMARCC1, KDM1A, YY1, RELA, MYC, ISL1, GRHL3, ARNT, OTX2, GATA3, ZSCAN4, GATA1, RCOR1, HAND2, CEBPB, TRIM28, PITX3, EBF3, PHOX2B, TCF12, EP300, SPI1, AR, GATA6, GATA2, TRIM24, TBX2
- Target gene symbol (double-evidenced CRMs): NRIP1,SAMSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops